Likelihood Calculation without Sex Differentiation

This function calculates the likelihood for an individual based on Weibull distribution parameters without considering sex differentiation.

Usage

lik_noSex(
  i,
  data,
  alpha,
  beta,
  delta,
  gamma,
  max_age,
  baselineRisk,
  BaselineNC
)

i: Integer, index of the individual in the data set.
data: Data frame, containing individual demographic and genetic information. Must include columns for 'age', 'aff' (affection status), and 'geno' (genotype).
alpha: Numeric, Weibull distribution shape parameter.
beta: Numeric, Weibull distribution scale parameter.
delta: Numeric, shift parameter for the Weibull function.
gamma: Numeric, asymptote parameter (only scales the entire distribution).
max_age: Integer, maximum age considered in the analysis.
baselineRisk: Numeric vector, baseline risk for each age.
BaselineNC: Logical, indicates if non-carrier penetrance should be based on SEER data or the calculated non-carrier penetrance.

Numeric vector, containing likelihood values for unaffected and affected individuals.