Processed Family Data

A dataset containing processed information about the first simulated 130 families. These families are referenced in the vigniette simulation_study.Rmd and using_penetrance.Rmd The user must specify the pedigree argument as a data frame which contains the family data (see test_fam). The family data must be in the correct format with the following columns:

Usage

simulated_families

Format

A list of processed family data.

Source

Generated for package example

Details

ID

A numeric value representing the unique identifier for each individual. There should be no duplicated entries.

Sex

A numeric value where 0 indicates female and 1 indicates male. Missing entries are not currently supported.

MotherID

A numeric value representing the unique identifier for an individual's mother.

FatherID

A numeric value representing the unique identifier for an individual's father.

isProband

A numeric value where 1 indicates the individual is a proband and 0 otherwise.

CurAge

A numeric value indicating the age of censoring (current age if the person is alive or age at death if the person is deceased). Allowed ages range from 1 to 94.

isAff

A numeric value indicating the affection status of cancer, with 1 for diagnosed individuals and 0 otherwise. Missing entries are not supported.

Age

A numeric value indicating the age of cancer diagnosis, encoded as NA if the individual was not diagnosed. Allowed ages range from 1 to 94.

Geno

A column for germline testing or tumor marker testing results. Positive results should be coded as 1, negative results as 0, and unknown results as NA or left empty.